PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_B98E347A8.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 265aa    MW: 29862.3 Da    PI: 8.1001
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_B98E347A8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.38.5e-3036141198
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k ltpsdv+k++rlv+pk++ae++      +++ e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F
  Traes_5BL_B98E347A8.1  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplnggDSPGEKDLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDIVHF 123
                            99****************************87445557778999******************************************** PP

                            EE-SS..SEE..EEEEE- CS
                     B3  83 kldgr..sefelvvkvfr 98 
                            ++++   ++ +l+++ +r
  Traes_5BL_B98E347A8.1 124 ERVRGlgTGDRLFIGCRR 141
                            *88655455556666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-3930146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-2833129IPR015300DNA-binding pseudobarrel domain
CDDcd100176.44E-2834128No hitNo description
PfamPF023623.9E-2736142IPR003340B3 DNA binding domain
SMARTSM010193.0E-2336142IPR003340B3 DNA binding domain
PROSITE profilePS5086313.36636142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAMHPLSQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDI  120
VHFERVRGLG TGDRLFIGCR RRGESAPSPV RVPPPTLNAG EQRPWSPMCY STSGSYPTSP  180
ANSYAYRRSV EQDHSDMLHA GESQREADAK SSTASAPPSR RLRLFGVNLD CGPEPEAEAI  240
TPMYGYTHQS PYAAVATVPS YWGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-413314511120DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578891.11e-171PREDICTED: B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-134Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLW5FH420.0W5FH42_WHEAT; Uncharacterized protein
STRINGBRADI4G42167.11e-171(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-60B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]